"Gene" (Text Content Type)
"Gene" (Text Content Type)
Text identified as the name of a gene.
Details
- "Gene" can be used in TextCases, TextPosition and TextContents.
- "Gene" corresponds to any mention of a gene (real or not real) in the context of the text.
- Homonyms of genes that are not genes should not be detected as "Gene" (if the context allows disambiguation).
- TextCases[…,"Gene""Interpretation"] attempts to return entities of type "Gene", as Interpreter["Gene"] does.
- Any specific "Gene" entity such as
can also be used as a content type in TextCases, TextPosition and TextContents.
Examples
Basic Examples (3)
Find occurrences of genes in a text:
TextCases["DYNC1H1 has been shown to interact with PAFAH1B1 and CDC5L.", "Gene"]Get the result as a list of "Gene" entities:
TextCases["DYNC1H1 has been shown to interact with PAFAH1B1 and CDC5L.", "Gene" -> "Interpretation", VerifyInterpretation -> True]A similar result can be obtained by applying Interpreter["Gene"] to text snippets:
Interpreter["Gene"][{"DYNC1H1", "PAFAH1B1", "CDC5L"}]Get properties about occurrences of genes:
TextContents["DYNC1H1 has been shown to interact with PAFAH1B1 and CDC5L.", "Gene", All]Find mentions of platelet-activating factor acetylhydrolase 1b in a text:
TextContents["DYNC1H1 has been shown to interact with PAFAH1B1 and CDC5L.", Entity["Gene", {"PAFAH1B1", {"Species" -> "HomoSapiens"}}]]