"Protein" (Text Content Type)
"Protein" (Text Content Type)
Text identified as the name of a protein.
Details
- "Protein" can be used in TextCases, TextPosition and TextContents.
- "Protein" corresponds to any mention of a protein (real or not real) in the context of the text.
- Homonyms of proteins that are not proteins should not be detected as "Protein" (if the context allows disambiguation).
- TextCases[…,"Protein""Interpretation"] attempts to return entities of type "Protein", as Interpreter["Protein"] does.
- Any specific "Protein" entity such as
can also be used as a content type in TextCases, TextPosition and TextContents.
Examples
Basic Examples (3)
Find occurrences of proteins in a text:
TextCases["Moreover, the UPS regulates the degradation of tumor suppressor gene products such as adenomatous polyposis coli (APC) in colorectal cancer, retinoblastoma (Rb). and von Hippel-Lindau tumor suppressor (VHL), as well as a number of proto-oncogenes (Raf, Myc, Myb, Rel, Src, Mos, Abl).", "Protein"]Get the result as a list of "Protein" entities:
TextCases["Moreover, the UPS regulates the degradation of tumor suppressor gene products such as adenomatous polyposis coli (APC) in colorectal cancer, retinoblastoma (Rb). and von Hippel-Lindau tumor suppressor (VHL), as well as a number of proto-oncogenes (Raf, Myc, Myb, Rel, Src, Mos, Abl).", "Protein" -> "Interpretation", VerifyInterpretation -> True]A similar result can be obtained by applying Interpreter["Protein"] to text snippets:
Interpreter["Protein"][{"adenomatous polyposis coli", "APC", "VHL", "Myc"}]Get properties about occurrences of proteins:
TextContents["Moreover, the UPS regulates the degradation of tumor suppressor gene products such as adenomatous polyposis coli (APC) in colorectal cancer, retinoblastoma (Rb). and von Hippel-Lindau tumor suppressor (VHL), as well as a number of proto-oncogenes (Raf, Myc, Myb, Rel, Src, Mos, Abl).", "Protein", All]Find mentions of adenomatous polyposis coli in a text:
TextContents["Moreover, the UPS regulates the degradation of tumor suppressor gene products such as adenomatous polyposis coli (APC) in colorectal cancer, retinoblastoma (Rb). and von Hippel-Lindau tumor suppressor (VHL), as well as a number of proto-oncogenes (Raf, Myc, Myb, Rel, Src, Mos, Abl). The UPS is also involved in the regulation of inflammatory responses.", Entity["Protein", "APC"]]